Discover Expert Bioinformatics Services Including Microbiome Analysis, Metagenomics Pipelines, And Cloud Deployment.
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AMPLICLOUD
AMPLiCLOUD is a cloud-hosted solution offering bioinformatics services in Singapore. Designed for microbiome researchers, it offers a code-free interface to streamline NGS data analysis. From importing ASV or OTU tables to selecting samples and taxa, AMPliCLOUD supports robust statistical workflows and generates publication-ready reports. Whether you’re conducting 16S rRNA, ITS, or shotgun metagenomics, AMPliCLOUD enables seamless end-to-end microbiome data processing. With intuitive dashboards and scalable cloud integration, it empowers researchers to derive actionable insights—anytime, anywhere. 👉 Explore more about QIIME2 and DADA2 pipelines supported in AMPliCLOUD.
Core Bioinformatics Services & Analytics
Our core bioinformatics services span microbiome research, metagenomics, whole-genome sequencing, and transcriptomics. We use DADA2 and QIIME for amplicon data denoising, taxonomy assignment, and diversity analysis. For shotgun metagenomics, we remove host reads, assemble contigs, bin MAGs, and annotate pathways using open-source tools. Our WGS workflows support viral, bacterial, and eukaryotic genomes, combining de novo and reference-guided assembly with gene and RNA annotation. In RNA-seq and metatranscriptomics, we quantify gene expression and reconstruct active pathways across microbial communities. Every project includes customizable deliverables such as QC reports, ASV/OTU or MAG tables, annotated sequences, and interactive visualizations—tailored to your reference databases and research goals.
Pipeline Engineering & Deployment
To make your Bioinformatics analysis reproducible and scalable, we offer custom workflow development using Nextflow, Snakemake, or pure R/Python scripts. We containerize pipelines with Docker or Singularity and integrate CI/CD via GitHub Actions for automation. These pipelines can be deployed on AWS, GCP, or Azure—configured for secure S3 buckets, autoscaling compute clusters, and real-time cost monitoring. For front-end interaction, we support Shiny apps or Streamlit dashboards that allow users to interactively explore results without writing code. 🌐 Need help with infrastructure deployment? Let’s talk.
Advance Modeling & Bioinformatics Support
Beyond primary data processing, our Advanced Modeling, Interpretation & Support services help you uncover insights and plan next steps. We apply machine learning methods—random forests, SVMs, and PLS regression—paired with LASSO or mRMR feature selection, hyperparameter tuning, and SHAP-based explainability to identify key biomarkers. For multi-omics studies, we integrate metagenomic, transcriptomic, and metabolomic data and construct correlation networks to reveal trait associations. We also offer support in experimental design, including power analysis and batch-effect mitigation, alongside metadata standards guidance. To build your team’s capabilities, we provide hands-on training in R, Python, and ML, with protocol SOPs, annotated code notebooks, and post-project support.