Omics data, visualised and explained.

Read every layer of one specimen in a single workspace. Explore genome, transcriptome, plasmid and variant results in an interactive browser, keep a versioned report, and talk it through with an application scientist and a bioinformatician.

One workspace for every omics layer.

Genome browser

Every feature of an assembled genome in one table and track view. Open a gene to see its position, product and functional annotation, with resistance and virulence hits flagged.

Filter by replicon and feature type, sort the table and follow the gene neighbourhood
Functional annotation from standard reference databases
Antimicrobial resistance and virulence hits in the genome summary
Back to the report, and a method note, from the same view

Differential expression

Compare conditions gene by gene. A volcano plot and a sortable gene table share the same filters, so you can move from the overall picture to individual genes.

Significance, fold-change and expression filters that update the plot and table together
Search a gene, paste a list of IDs to highlight, or box-select on the plot
Set your own colours for publication figures
Export the plot as SVG or PNG and the table as CSV

Pathway viewer

Browse pathways by how much of each one your sample covers, then open the pathway map with your detected genes highlighted.

Pathways and modules, searchable and filterable by category
Coverage shown for every pathway
Pathway maps with sample-specific highlighting
Export the pathway table

Plasmid maps

An annotated circular or linear map of your assembled plasmid, with every feature a click away.

Summary statistics for length, topology, GC, coverage and accuracy
Click a feature to see its position, length, identity and sequence
Switch between circular and linear views and choose a colour scheme
Download the map as PNG, CSV or FASTA

Bacterial genomes

Assembly and annotation with a genome browser, resistance and virulence screening, and pathway coverage.

Eukaryotic genomes

Annotation and functional categories for fungi, algae and other eukaryotes, with a genome plot and gene table.

Viral genomes

Assembly and annotation reports for viral samples, with virus family and completeness calls.

Transcriptomes

Differential expression results, volcano plots, pathway enrichment and sample-level QC, from counts to a story you can defend.

Variants

Call variants across isolates and browse SNPs and indels per isolate, with the genes they affect.

Phylogeny

Place isolates on a phylogenetic tree built from their shared variants.

Whole plasmid sequencing

Plasmid assembly and annotation, with the construct checked base for base against your design.

Long reads

Open full-length reads, quality scores and the assembly they resolved.

Looking at microbial communities rather than genomes? Nova Microbiome Lab covers amplicon and metagenomic profiling →

See it on your own data.

Tell us about your samples and questions. We reply with how Omics Lab would handle them.